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• Trinity jobs on hold for four days
  Hi everybody, Is there anything wrong with the Trinity De Novo RNA-Seq assembly? I submitted my j...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• where is the de novo assembler?
  hi, first of all thanks for your hard work! I'm trying to do a de novo assembly of a mouse transc...
• de novo assembly in Galaxy using multiple transcriptomes
  I want to do de novo assembly of about 13 fferent transcriptome libraries however in Trinity I fo...
• Job waiting to run (Trinity)
  Hi, I’m a new user of Galaxy. I’m just trying to run a De novo Assembly with Trinity. It’s been ...
• Trinity job not running
  Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired...
• De Novo Assembly Plant Transcriptome
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• De novo transcriptome analysis pipeline
  Hello, I am currently running Trinity to do de novo transcriptome assembly of a breeding gland ...
• De Novo Assembly
  Hello, I would like to know if Galaxy can do de novo assembly without a reference genome. Thanks....
• De novo assembly -Trinity
  Hi All As my project makes a progress I would now like to use Trinity for de novo assembly. I ha...
• Failiure in running Trinity
  Dear admin, I am trying to de novo assemble my paired-end data (2*100, 460 million reads), but th...
• How to make De novo genome assembly?
  Hi, I have an account "on Main".I can't find Velvet for De  Novo genome assembly. However i have...
• Suggestions For De Novo Assembly Plant Transcriptome Without Reference
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• De novo assembly of a genome sequence
  I am new to the Galaxy. Can you do a de novo sequence asembly using the Galaxy? Thanks.
• Velvet in usegalaxy.org
  How can i use velvet assembler in usegalaxy.org for de novo whole genome assembly. ?
• Probem with the Trinity de-novo assembly for big dataset (128GB)
  I had 48 paired end samples, I concatinae all the 24 forward and reverse paired separately and tr...
• De Novo Rna-Seq Workflow
  Hi guys, I am looking for a de novo RNA-seq workflow that uses trinity. Any idea if there is one...
• Queue times to run Trinity?
  Hello, I'm rather new to Galaxy. I'm trying to run de novo assembly for RNAseq data using Trinit...
• de novo assembly
  Hi folks I would like to use de novo assembly and quantification for mink RNA-Seq data. I am won...
• Using Our Own Reference Genome ?
  Hi everyone, I am Didier Zoccola and i am marine biologist working on corals. I would like to d...
• Trinity Assembly - data files too big
  I'd like to run a Trinity de novo assembly in Galaxy. My left and right concatenated files are ~2...
• Quality Assessment of RNA de novo assemble (trinity) without reference genome
  Hello, Are there any tools within the galaxy tool shed that would give me a quality assessment o...
• salmon output files in Galaxy
  Hi all, I used Salmon tool in Galaxy to both align to my de novo transcriptome assembly and to qu...
• Fwd: De Novo Assembly
  Forgive the forwarded email. Not used to working from an iPad.