Question: Using Our Own Reference Genome ?
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Didier Zoccola • 10 wrote:
Hi everyone,
I am Didier Zoccola and i am marine biologist working on corals. I
would like to do a illumina mapping from RNA-seq coming from
environmental conditions. For that, i would like to use Bowtie but i
have not a reference genome. We have done a de novo transcriptome
using trinity assembly. I have filter by quality all my data. One
possible thing is to download all the manipulated sequences on my
computer and use Bowtie on my machine but it will take long time
because my computer is not appropriate for this. An other thing is to
download my reference transcriptome on your server. Is it possible?
If not, what is the characteristics of the "ideal" computer to do the
job locally ?
thank you in advance
Best regards
Didier Zoccola
Centre Scientifique de Monaco
avenue Saint Martin
98000 Monaco
â +377 97 77 08 73
zoccola@centrescientifique.mc
http:// www.centrescientifique.mc
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modified 6.1 years ago
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Jennifer Hillman Jackson ♦ 25k
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6.1 years ago by
Didier Zoccola • 10
