Question: Trinity job not running
gravatar for gg832
19 months ago by
gg83220 wrote:

Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired-end sequences (~125 GB total). Do I need to contact the admins each time I try to run this job? I say "each time" because of the trouble with the servers. My data ran once, but it terminated abnormally, and produced an empty file. The last two times I've tried to run it, it has stayed at "waiting to run" for 3+ days. I've just resubmitted it for a third time. If there's anything else I need to do to get it to run, please let me know. In the past, I've used all default parameters, this time I specified the job resource parameters as "PSC bridges (defaut)." Thanks, Gia

trinity galaxy • 443 views
ADD COMMENTlink modified 19 months ago by Jennifer Hillman Jackson25k • written 19 months ago by gg83220

Thanks, We have had more reports of problems and are looking into this again. We appreciate the feedback. More updates soon. - Jen, Galaxy team

ADD REPLYlink written 19 months ago by Jennifer Hillman Jackson25k
gravatar for Jennifer Hillman Jackson
19 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Trinity was corrected again mid-day Friday EST. Please re-run any jobs that failed.

If you have jobs that were started after that time, those will also need to be re-run (and the original grey jobs deleted/purged).

Sorry for the inconvenience, Jen, Galaxy team

ADD COMMENTlink written 19 months ago by Jennifer Hillman Jackson25k
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