I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinity on Galaxy main. The job appears to have finished, although when I look at the details in my history it says
"workdir is /pylon5/mc48nsp/xcgalaxy/main/staging/19349785/working Running Trinity from /local/2956986 slurmstepd: error: Exceeded step memory limit at some point."
However the assembly seems reasonable: ~223,786 transcripts is not surprising given the number of reads that went into it. Did the tool stop prematurely, or is this result ok?
Cheers and thanks, Katie