hi, first of all thanks for your hard work! I'm trying to do a de novo assembly of a mouse transcriptome but did not find a de novo assembler. I did see one called "trinity" though, from your tutorial video (yet the GUI in the video is out-dated so the current GUI does not have it). So my question is where is the de novo assembler(s) please?
Also another question: what's the differences of mm10 and mm9 etc.? For my specific project I wanna analyze mouse whole transcriptome, should I use mm10 or mm9 please?
Looking forward to your reply, thanks a lot!