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Question: de novo assembly
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gravatar for famini
4.6 years ago by
famini • 20
Canada
famini • 20 wrote:

Hi folks

I would like to use de novo assembly and quantification for mink RNA-Seq data. I am wondering which options I need to choose in Galaxy?

Farhad
rna-seq • 3.2k views
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modified 4.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.6 years ago by famini • 20
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gravatar for Jennifer Hillman Jackson
4.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi Farhad,

The answers in this prior post from Peter and Jeremy are still good except that you'll want to look in the Tool Shed for all tools now (http://usegalaxy.org/toolshed).

Please have a look: De Novo Assembly

Also, on the far right column you'll also see more on this subject from prior Q&A to explore. 

Take care, Jen, Galaxy team
ADD COMMENT • link modified 4.6 years ago • written 4.6 years ago by Jennifer Hillman Jackson ♦ 25k
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