Question: How to make De novo genome assembly?
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mmdiagne • 10 wrote:
Hi,
I have an account "on Main".I can't find Velvet for De Novo genome assembly. However i have seen a toturial where it is noticed that we can use this software in Galaxy.
Can you help me to find it or another software which can permit to do De Novo assembly?
Thank you.
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modified 3.5 years ago
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Martin Čech ♦♦ 4.9k
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3.5 years ago by
mmdiagne • 10
Thank you Martin Čech !
So for being able to use Velvet, i can't be in an account on Main, right?
Do you know if i can actually use another way in Galaxy on Main to perform a De Novo Assembly?
You can look into assembly section in the https://toolshed.g2.bx.psu.edu/ and you can look for Galaxies with assembly tools are https://wiki.galaxyproject.org/PublicGalaxyServers
I will check these links. I've just seen a a galaxy-based viral genome assembly pipeline clled virAmp. It is on this link: http://viramp.com/
Do you know it? It seems to be easier for all the different steps of NGS data analysis.