Question: Need help with "patmatdb" tool
gravatar for jack.gaynor
4.4 years ago by
United States
jack.gaynor0 wrote:

Everytime I try to use open brackets or "{ or }" I get an error message.  Would really like to be able to use these feature of patmatdb when searching patters.  Can anyone help?  Thanks

Jack Gaynor


Tool name: patmatdb
Tool version: 5.0.0
Tool ID: patmatdb67/5.0.0
ToolShed URL:


patmatdb • 926 views
ADD COMMENTlink modified 4.4 years ago by Jennifer Hillman Jackson25k • written 4.4 years ago by jack.gaynor0
gravatar for Jennifer Hillman Jackson
4.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This option is on by default in all Galaxy installs, but you can configure the settings to permit the query to pass through unchanged. Do this only on a non-public site, or if you do open this up on a public site - understand exactly what security issues may be involved per tool through your own risk analysis.

So, if on your own local Galaxy, review the universe_wsgi.ini here, and adjust what you want to be filtered.

# ToolBox filtering
# Modules from lib/galaxy/tools/filters/ can be specified in the following lines.
# tool_* filters will be applied for all users and can not be changed by them.
# user_tool_* filters will be shown under user preferences and can be toogled
# on and off by runtime
#user_tool_filters = examples:restrict_upload_to_admins, examples:restrict_encode
#user_tool_section_filters = examples:restrict_text
#user_tool_label_filters = examples:restrict_upload_to_admins, examples:restrict_encode

Best, Jen, Galaxy team

ADD COMMENTlink written 4.4 years ago by Jennifer Hillman Jackson25k
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