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Question: Need help with "Tophat2" tool
1
gravatar for skhurts1
4.3 years ago by
skhurts1 • 10
skhurts1 • 10 wrote:

I have uploaded fastq file to the galaxy, I can see it on the right "history", but I can not see it in tophat2.

 

Tool name: Tophat2
Tool version: 0.6
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/0.6
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/tophat2

 
tophat2 • 1.1k views
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modified 4.3 years ago by Martin Čech ♦♦ 4.9k • written 4.3 years ago by skhurts1 • 10
1
gravatar for Martin Čech
4.3 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Please see my answer here: Need help with "Map with BWA for Illumina" tool

You have most likely the same problem and need to use tool FastqGroomer  to change fastq format to the one desired by the tool.
ADD COMMENT • link modified 4.3 years ago • written 4.3 years ago by Martin Čech ♦♦ 4.9k
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