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Question: Need help with "Map with BWA for Illumina" tool
0
gravatar for kgeider4
4.0 years ago by
kgeider4 • 0
Germany
kgeider4 • 0 wrote:

biuld index

 

Tool name: Map with BWA for Illumina
Tool version: 1.2.3
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/bwa_wrappers

 
toolshed bwa reference genomes • 1.1k views
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modified 4.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.0 years ago by kgeider4 • 0

Unless you provide something more than two words I am afraid nobody will care enough to help you.

ADD REPLY • link written 4.0 years ago by Martin Čech ♦♦ 4.9k

Is this in reference to a tool failing to run, or are you trying to install the tool listed here?

ADD REPLY • link written 4.0 years ago by Dannon Baker ♦ 3.7k
0
gravatar for Jennifer Hillman Jackson
4.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

If you have loaded this tool into a local/cloud Galaxy, you have two choices:

1. Create the indexes and add them to the instance as an administrator. Try the Data Managers in the Tool Shed.
    http://wiki.galaxyproject.org/Admin/DataIntegration

2. Just load the fasta version of the reference genome as a dataset and use it as a Custom Reference Genome. This generally works on any Galaxy, including public sites. Uses more resource, but is a simple path for using any genome you wish quickly.
     http://wiki.galaxyproject.org/Support#Custom_reference_genome

Best, Jen, Galaxy team
ADD COMMENT • link written 4.0 years ago by Jennifer Hillman Jackson ♦ 25k
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