Similar posts • Search »

• Need help with "Cufflinks" tool
  Hi, How long does it take usually that GALAXY upgrade with a new version of Cufflink (version 2....
• Need help with "Cufflinks" tool
  What value does Galaxy use for -max-bundle-frags? I could not find a way of changing this paramet...
• Need help with "Feature coverage" tool
  for what purpose it is and what type of input data it needs   Tool name: Feature coverage Tool...
• Need help with "SICER" tool
  How can you add a genome to SICER in Galaxy?     Tool name: SICER Tool version: 0.0.1 Tool ID...
• Need help with "Filter SAM" tool
      Tool name: Filter SAM Tool version: 1.0.0 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sa...
• Need help with "FASTQ Groomer" tool
      Tool name: FASTQ Groomer Tool version: 1.0.4 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam...
• Need help with "Tophat2" tool
  My Galaxy Tophat2 program is not running. Is there is any server problem   Tool name: Tophat2 ...
• Need help with "Filter by quality" tool
  which formet this tool gets?   Tool name: Filter by quality Tool version: 1.0.0 Tool ID: tools...
• Need help with "FASTQ Quality Trimmer" tool
  I am not able to add my file to this tool.     Tool name: FASTQ Quality Trimmer Tool version:...
• Need help with "Mark Duplicate reads" tool
  What is the aim of this tool?   Tool name: Mark Duplicate reads Tool version: 1.56.0 Tool ID: ...
• Need help with "Map with BWA for Illumina" tool
  biuld index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx...
• Need help with "patmatdb" tool
  where to find the motif detail for plant membrane proteins   Tool name: patmatdb Tool version:...
• Need help with "Bowtie2" tool
  Hi, is there a way to upload our own reference genome?   Tool name: Bowtie2 Tool version: 0.2 ...
• Need help with "Map with BWA for Illumina" tool
  index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx.psu.e...
• Need help with "Cuffcompare" tool
  Dear Jennifer,           We did not get the right information what we are looking for. The only ...
• Need help with "Tophat2" tool
  Hi Galaxy Team:            Rice genome has 12 chromosomes. But our output file from Tophat2 is o...
• Need help with "Map with Bowtie for Illumina" tool - Methanosarcina acetivorans
  Hi there,  Would it be able to include "Methanosarcina acetivorans C2A" in the Reference Genome ...
• Need help with "Map with Bowtie for Illumina" tool
  How long will "This job is waiting to run" take?   Tool name: Map with Bowtie for Illumina Too...
• Need help with "Generate pileup" tool
  Dear, What kind of files should i use to "using reference genome" and where get it? I trying to...
• Need help with "Filter by quality" tool
  Why doesn't this tool recognize my fastq files? It won't let me run the tool on the fastq files I...
• Need help with "Clip" tool
  hi, i have a question about this tool i heard that galaxy has 'trimmomatic' tool. But i can't f...
• Need help with "FASTQ Quality Trimmer" tool
  I have uploaded .fastq files successfully but the "FASTQ file" drop-down list doesn't show my .fa...