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Question: Need help with "Fetch taxonomic representation" tool
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gravatar for elsayedhejazy
4.5 years ago by
elsayedhejazy • 10
Egypt
elsayedhejazy • 10 wrote:

Hello,

i need to fetch the HCV sequence from my data set how can i use the fetch-taxonomic-representation to perform this operation

Best Regards,

elsayed  

 

Tool name: Fetch taxonomic representation
Tool version: 1.1.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/gi2taxonomy/Fetch Taxonomic Ranks/1.1.0
ToolShed URL: http://toolshed.g2.bx.psu.edu/view/devteam/gi2taxonomy

 
fetch-taxonomic-representation • 1.2k views
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modified 4.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.5 years ago by elsayedhejazy • 10
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gravatar for Jennifer Hillman Jackson
4.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi Elsayed,

This tool will characterize sequence hits, but does not retrieve them from Genbank for you. If you have some hits to particular accessions you wish to use in Galaxy in fasta (?) format, then I would locate them in Genbank and then import.

If you had something else in mind, please share more details.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 4.5 years ago by Jennifer Hillman Jackson ♦ 25k
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