Question: Need help with "Tabular-to-FASTA" tool
1
gravatar for hwexler
3.8 years ago by
hwexler20
United States
hwexler20 wrote:

I am trying to use this tool to convert genes that are in excel to fasta format.  I saved as tab delimited text and uploaded to galaxy, but I can't seem to choose my file when trying to use the tool.

 

Any help would be most welcome.


 

Tool name: Tabular-to-FASTA
Tool version: 1.1.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.0
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/tabular_to_fasta

tabular-to-fasta • 1.1k views
ADD COMMENTlink modified 3.8 years ago by Martin Čech ♦♦ 4.9k • written 3.8 years ago by hwexler20
2
gravatar for Martin Čech
3.8 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

In order to be shown in the dataset selection dropdown within the tool form the dataset needs to have the right datatype specified. You can try setting the datatype to 'tabular' manually if you click on the dataset's 'pencil' icon in the history and select the Datatype tab.

ADD COMMENTlink written 3.8 years ago by Martin Čech ♦♦ 4.9k
1

Hi Thanks Martin, but it won't let me manually change it (it calls it roadmap) once I upload because it says it is in use.

ADD REPLYlink written 3.8 years ago by hwexler20
1

In that case it seems the auto-detect job is still running. Are you using https://usegalaxy.org server? Try uploading the dataset again and setting the tabular type right when uploading.

ADD REPLYlink written 3.8 years ago by Martin Čech ♦♦ 4.9k
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