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Question: Need help with "Filter SAM" tool
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gravatar for yinkangquan
4.2 years ago by
yinkangquan • 0
China
yinkangquan • 0 wrote:

 

 

Tool name: Filter SAM
Tool version: 1.0.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sam_bitwise_flag_filter/sam_bw_filter/1.0.0
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/sam_bitwise_flag_filter

 
filter-sam • 985 views
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modified 4.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.2 years ago by yinkangquan • 0
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gravatar for Jennifer Hillman Jackson
4.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Usage help is on the tool form itself. But if you need specific help or have a question, could you please explain more about it?

Thanks, Jen, Galaxy team
ADD COMMENT • link written 4.2 years ago by Jennifer Hillman Jackson ♦ 25k

Dear Jen,

Does the "Filter SAM" without any other options mean only filter out reads that map to the reference? Is "Filter SAM" necessary for RNA-seq analysis using data from single-end reads form Illumina hiseq 2000?

Best,

Kangquan

ADD REPLY • link modified 4.2 years ago • written 4.2 years ago by yinkangquan • 0
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