Question: Need help with "Filter SAM" tool
0
gravatar for yinkangquan
4.2 years ago by
China
yinkangquan0 wrote:

 


 

Tool name: Filter SAM
Tool version: 1.0.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sam_bitwise_flag_filter/sam_bw_filter/1.0.0
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/sam_bitwise_flag_filter

 

filter-sam • 985 views
ADD COMMENTlink modified 4.2 years ago by Jennifer Hillman Jackson25k • written 4.2 years ago by yinkangquan0
0
gravatar for Jennifer Hillman Jackson
4.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Usage help is on the tool form itself. But if you need specific help or have a question, could you please explain more about it?

Thanks, Jen, Galaxy team

ADD COMMENTlink written 4.2 years ago by Jennifer Hillman Jackson25k

Dear Jen,

Does the "Filter SAM" without any other options mean only filter out reads that map to the reference? Is "Filter SAM" necessary for RNA-seq analysis using data from single-end reads form Illumina hiseq 2000?

Best,

Kangquan

ADD REPLYlink modified 4.2 years ago • written 4.2 years ago by yinkangquan0
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