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• How to find exact tool revision
  Hello, This link https://usegalaxy.org/api/tools provide me with the following information:    ...
• Need help with "Realigner Target Creator" tool
  Hi every one, If somebody familiar with using the GATK realigner target creator on galaxy? My d...
• "NGS: Picard (beta) Mark Duplicate reads" missing at Main
  It looks like "NGS: Picard (beta) Mark Duplicate reads" is no longer available at Main. Is it pos...
• Need help with "Unified Genotyper" tool
  Every time I try to use the Unified Genotyper Tool under GATK, I receive the following error mess...
• Need help with "SAM to FASTQ" tool
  Hello, To convert to FASTQ format, I saved a SAM formatted file in the History, however, this fi...
• Need help with "Barcode Splitter" tool
  i uploaded a fastq file of the output from the sequencing but it is not recognized as a "library"...
• Need help with "Map with Bowtie for Illumina" tool
  Hi, I would like to map RNA-seq reads to the genome of banana. Is it possible to include it in th...
• Need help with "Feature coverage" tool
  for what purpose it is and what type of input data it needs   Tool name: Feature coverage Tool...
• Need help with "SICER" tool
  How can you add a genome to SICER in Galaxy?     Tool name: SICER Tool version: 0.0.1 Tool ID...
• Need help with "Filter SAM" tool
      Tool name: Filter SAM Tool version: 1.0.0 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sa...
• Need help with "FASTQ Groomer" tool
      Tool name: FASTQ Groomer Tool version: 1.0.4 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam...
• Need help with "Cufflinks" tool
      Tool name: Cufflinks Tool version: 0.0.7 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/cuf...
• Need help with "Filter by quality" tool
  which formet this tool gets?   Tool name: Filter by quality Tool version: 1.0.0 Tool ID: tools...
• Need help with "FASTQ Quality Trimmer" tool
  I am not able to add my file to this tool.     Tool name: FASTQ Quality Trimmer Tool version:...
• Need help with "Map with BWA for Illumina" tool
  biuld index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx...
• Need help with "Reorder SAM/BAM" tool
  HI am trying to reorder a SAM file output from BWA. So I can use it in GATK.   However I get the...
• Need help with "Tophat2" tool
  My Galaxy Tophat2 program is not running. Is there is any server problem   Tool name: Tophat2 ...
• Need help with "patmatdb" tool
  where to find the motif detail for plant membrane proteins   Tool name: patmatdb Tool version:...
• Need help with "Bowtie2" tool
  Hi, is there a way to upload our own reference genome?   Tool name: Bowtie2 Tool version: 0.2 ...
• Need help with "Map with BWA for Illumina" tool
  index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx.psu.e...
• Need help with "FASTQ Trimmer" tool
  FASTQ Trimmer seems unable to recognize my FASTQ files as input. For e.g. I carried out FASTQ to ...
• Need help with "MPileup" tool
  I am trying to get SNPs and indels from a bowtie 2 on Illumina reads matched to the sinorhizobium...