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Question: Need help with "Filter by quality" tool
0
gravatar for yotamhu
4.5 years ago by
yotamhu • 0
European Union
yotamhu • 0 wrote:

which formet this tool gets?

 

Tool name: Filter by quality
Tool version: 1.0.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.0
ToolShed URL: http://toolshed.g2.bx.psu.edu/view/devteam/fastq_quality_filter

 
filter-by-quality • 1.1k views
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modified 4.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.5 years ago by yotamhu • 0
2
gravatar for fubar
4.5 years ago by
fubar ♦ 1.1k
Australia
fubar ♦ 1.1k wrote:

The tool xml input data parameter definition in the toolshed repository (copied below) restricts the format to fastqsolexa or fastqsanger datatypes in your history. If you have recently generated illumina fastq datasets not showing up, they can safely be changed manually to the fastqsanger dataset type in your history (pencil icon : datatype) or via the fastq groomer in a workflow. They will then appear in the tool input selection box.

<inputs>

<param format="fastqsolexa,fastqsanger" name="input" type="data" label="Library to filter" />

.....
ADD COMMENT • link modified 4.5 years ago • written 4.5 years ago by fubar ♦ 1.1k
0
gravatar for Jennifer Hillman Jackson
4.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Ross is correct. I'll just add that this wiki/video has instructions if need help determining the datatype of your fastq data:
https://wiki.galaxyproject.org/Support#FASTQ_Datatype_QA

Best, Jen, Galaxy team
ADD COMMENT • link written 4.5 years ago by Jennifer Hillman Jackson ♦ 25k
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