Question: Help with bowtie2: reference genome for mapping is not listed
gravatar for lperez
3.1 years ago by
lperez0 wrote:


my name is Leticia Perez and I am from Uruguay, School of Sciences, University of the Replublica (Facultad de Ciencias, Universidad de la República).

I am trying to analyze my RNA seq data using galaxy plattform, but I can´t align my reads because my reference genome is not in the list. I work with trypanosoma cruzi strain CL Brener (which is a hybrid between Esmeraldo like and non Esmeraldo like strains). Could you upload this genome in the list?

I downloaded both genomes and I have both in only one file, is there a way for me to upload?

Thanks in advance


rna-seq bowtie galaxy • 769 views
ADD COMMENTlink modified 3.1 years ago by Jennifer Hillman Jackson25k • written 3.1 years ago by lperez0
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Use the Custom Reference genome method to work with tools now:

Thanks for using Galaxy! Jen, Galaxy team

ADD COMMENTlink written 3.1 years ago by Jennifer Hillman Jackson25k
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