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Question: Index Brassica napus at http://usegalaxy.org (use Custom Genome near-term)
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gravatar for villayatbotcup786
2.2 years ago by
villayatbotcup786 • 0
villayatbotcup786 • 0 wrote:

Dear sir, i am working on galaxy from last one months and i am very well appraise with the performance and its feasibility for a non computational guy. I am using tophat gapped-read mapper .. for align Brassica napus unfortunately my interest genome is not list on galaxy. Please upload the reference genome of brassica napus on galaxy.

Best Regards
request tophat genome reference custom • 655 views
ADD COMMENT • link •
modified 2.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.2 years ago by villayatbotcup786 • 0
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gravatar for Jennifer Hillman Jackson
2.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The genome can be used with tools right now as a Custom Reference Genome. This is how:https://wiki.galaxyproject.org/Support#Custom_reference_genome

New genomes for indexing are under consideration. Request are accepted at this ticket - please follow the instructions in the top post. These will not be immediately added, so use a Custom Genome near-term. https://github.com/galaxyproject/galaxy/issues/1470

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.2 years ago by Jennifer Hillman Jackson ♦ 25k

hello, Thanks a lots for your above link instruction i go through it and learn lots of things .

That,s great to know. Regards villayat Ali

ADD REPLY • link written 2.2 years ago by villayatbotcup786 • 0
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