Question: Question About Building A Reference Genome Index Using Bowtie
1
William Light • 50 wrote:
I am trying to compare two genetically different strains that I have
sequenced using SOLiD. I was trying to ask where these two strains
are
different, either in terms of deletions or polymorphisms, and one idea
I
had was to use Bowtie to create an index from one of these strains and
then
to map my reads for the other strain using this index. Is this a
reasonable strategy?
- Will Light
Northwestern University