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• will you please add some plant genomes
  will you please add some plant genomes, like Arabidopsis, Tomato, Potato, Rice, Citrus, thanks (I...
• SAM-to-BAM (NGS: SAMtools)
  I am trying to convert my SAM file to BAM file and I want to use the built in genome, but there i...
• Other uses than genomic data
  Hi, I am new to using Galaxy, I am wondering if the functionality that is being used for the dat...
• Extract MAF for whole genome and some species
  Hello, I am trying to obtain the whole genomes for some species with Galaxy. I have found the ve...
• Add Other Genomes To Galaxy
  Hi, Is there any chance to add a new genome reference to the Galaxy browser? I am working on the...
• macaca fascicularis genome
  Dear Sir/Madam My name is Veeranagouda Yaligara. We are interested in Identification of novel Bi...
• Delays with Processing Custom Genome Builds
  Has anyone else been experiencing very long wait times when creating custom genome builds? I hav...
• Reference genome for RNA STAR
  Hi, I am trying to use STAR for aligning RNASeq data but it doesn't have any reference genome. I...
• built-in genome for HISAT2 not available
  I am trying to map fastq to mm9 genome using HISAT2. But the drop-down list of built-in genomes i...
• Collect Alignment Summary Metrics won't run?
  Hi all, I am trying to run Collect Alignment Summary Metrics on my RNA Seq data and every time i...
• Link UCSC local genome browser with a local Galaxy instance
  Dear all, I am trying to link my local ucsc genome browser with my local Galaxy instance. I fin...
• Adding plant genome browser to the galaxy
  Hi I am wishing to add the plant genome browser to galaxy. I iniially thought about UCSC as it h...
• Aachanges
  Hi everybody, Maybe a dumb question but does someone know if we can use the aaChanges tool on a ...
• Pipeline annotate genome
  Hi  evreyone  i am  beginner in bioinforantique  i want to know what  is  the  Pipeline to use  f...
• Whixh Setting Should Be Used To Upload Mouse Reference Genome?
  Dear All, I am going to search the alternative splicing events bentween datasets. I am not sure ...
• Comparing two datasets with a custom genome
  I have an ran seq experiment -paired end, 100 bp, where I am trying to compare control vs test sa...
• Genome source from history in SnpEff
  Hello, I am using SnpEff in Galaxy to add variant information to my vcf file. Please let me ask 2...
• Request To Add Reference Genome
  Hello Galaxy Team, I am writing to request that the genome of *Sinorhizobium meliloti *1021 be a...