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Question: Listing genome reference
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gravatar for tabory11
12 months ago by
tabory11 • 0
tabory11 • 0 wrote:

Hi, I would like to map reads against genome reference but my genome of interest is not listed. Is it possible to add the genome of triticum aestivum in the list?

Thanks,
alignment • 357 views
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modified 12 months ago by Mesohexaploid • 10 • written 12 months ago by tabory11 • 0
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gravatar for Mesohexaploid
12 months ago by
Mesohexaploid • 10
Mesohexaploid • 10 wrote:

Hello,

I am also interested in the addition of a wheat reference genome. From what I understand, genome additions can be requested here:

https://github.com/galaxyproject/galaxy/issues/1470

However, if you look at the thread, Triticum aestivum is already listed as being under review (since April 2016), hopefully it will eventually be added.

For now, it seems the only option is to upload it as a custom genome.

Regards
ADD COMMENT • link written 12 months ago by Mesohexaploid • 10
1

Correct, wheat and several other genomes, in particular requested plant genomes, have not been indexed yet. The process to add new indexes is undergoing some changes but we expect to get this going again soon. All updates will be recorded on that ticket.

Custom genome FAQ: https://galaxyproject.org/learn/custom-genomes/

Thanks! Jen, Galaxy team

ADD REPLY • link modified 12 months ago • written 12 months ago by Jennifer Hillman Jackson ♦ 25k
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