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• Rice Reference Genome
  Hi Aaron, I don't - but I am not sure if it is there anyway (didn't find or missed it). This wil...
• Questions about addition of reference genome in Bowtie2
    Now I'm going to analyze my ChIP-seq data with Galaxy, but there is not the species I want on ...
• cuffdiff conditions related question
  Hello, I am using Galaxy to analyze the RNA-seq data. I want to ask one question related to the ...
• Generation of reference using CLC Genomic Workbench
  Hello everyone,  I  have to analyse the transcriptome data in order to identify differentially e...
• Need to GFF file for RNA-seq analysis
  Hello, I am doing RNA-seq analysis using use galaxy.org, I want to run htseq but I do not know...
• Genome Not Available On Galaxy
  Hello, I am a new galaxy user and cannot find my reference genome in the drop down menu. I perfor...
• Help with bowtie2: reference genome for mapping is not listed
  Hi! my name is Leticia Perez and I am from Uruguay, School of Sciences, University of the Replub...
• Add a reference genome
  Dear Mr./Ms., I just want to use HISAT in RNA-Seq, and I want to use Pseudomonas aeruginosa ...
• Rna-Seq With Staphylococcus Aureus Strain Newman
  Hello, Would you please add Staphylococcus aureus strain Newman to your database? Workflows to ...
• Looking for SNPs and indels simultaneously in two genome datasets
  Hi all,  I am very new to NGS and Galaxy, and I have some very basic questions. My goal is to id...
• reference genome not present in Galaxy
  good morning,   i would like to use Bowtie or BWA to map reads from Illumina sequencing to the ...
• Galaxy Tuxedo Protocol Questions
  Hi everybody, I'm totally new to RNA-seq analyses and it's my first time doing this and using Ga...
• Candida Albicans Reference Genome
  Hello, I am just wondering whether it would be possible to implement the C. albicans reference ...
• Which Reference Genome Should I Select
  Dear All, I am going to run Tophat with mouse RNA-seq datasets. When I uploaded the datasets wit...
• How to add and use a custom reference genome
  Dear Sir or Madam, May I know how to add some other genome information for custemerized analysis...
• Question About Building A Reference Genome Index Using Bowtie
  I am trying to compare two genetically different strains that I have sequenced using SOLiD. I wa...
• Add a new reference genome
  Dear sir,    Sorry to bother you. I am not sure it is right to contact with you, but i need some...
• Extract Genomic DNA - no recognized datasets
  Hi, I am new to galaxy. I wish to use the Extract Genomic DNA tool, but under "Fetch sequences f...
• Reference genome not in the list
  Hi, I am working on ChIP-seq. I just uploaded my fastq files into galaxy. But i couldn't find t...