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• Cucumber Genome
  Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please...
• Problem regarding reference genome
  Hi, I am doing RNA seq. analysis in galaxy (using tophat tool). But problem is that my genome of...
• How To Add A Built-In Index For Tophat2?
  TopHat2 needs built-in index/ reference genome in order for it to run. I need to add hg 16 index ...
• Listing genome reference
  Hi, I would like to map reads against genome reference but my genome of interest is not listed. I...
• Reference genome absent
  Dear Biostar, For mapping our paired end reads against horse, we are unable to find a reference ...
• Add a new reference genome
  Dear sir,    Sorry to bother you. I am not sure it is right to contact with you, but i need some...
• Index Brassica napus at http://usegalaxy.org (use Custom Genome near-term)
  Dear sir, i am working on galaxy from last one months and i am very well appraise with the perfor...
• RNA Seq Tribolium castaneum Reference Genome Version
  TopHat2 lists *Tribolium castaneum* reference genome. How can I check if the listed version is th...
• Other reference genomes not listed
  Hello, I really like Galaxy tool but I have the problem that it does not contain the reference g...
• How to upload a reference genome
  Hi!, I am a new user in the Galaxy project and I want to map my reads with a genome that is not i...
• pigtailed macaque reference genome
  Hello Will the pigtailed macaque genome be available in the reference genome list soon ? thanks ...
• NGS:mapping against maize reference
  Hi, when I select NGS:Mapping / Bowtie2 or BWA, in order to align sequences from GBS against a r...
• Add a reference genome
  Dear Mr./Ms., I just want to use HISAT in RNA-Seq, and I want to use Pseudomonas aeruginosa ...
• FastQC form setting and usage
  What does Contaminant list mean? For an example when I select the settings for the FastQC:Read QC...
• Cucumber Genome
  Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please...
• Addition of Rickettsia prowazekii to Bowtie2 reference genome list
  Can the Galaxy team incorporate Rickettsia prowazekii Madrid E (NC_000963.1) into the reference g...
• How to add custom reference genome
  Dear Sir, I am using a shared TUXEDo protocol for RNA seq analysis for bacteria. I am not able to...
• Adding a reference genome to local Galaxy
  Hello I am using a local instance of Galaxy to call variants among six sets of reads from mouse ...
• problem with diamond
  Hello. I am trying to use diamond but fail to do so, due there was no reference genome...
• Tuxedo_Custome build genome
  I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my ...
• HISAT2 - no reference genome available
  HISAT2 does not have any options for a built-in reference genome. I need mm10. Source for the r...
• Upload Jatropha Reference genome for Bowtie2
  Hi Team Galaxy, I would kindly request you to upload Jatropha curcas reference genome in Galaxy ...