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Question: Candida Albicans Reference Genome
1
gravatar for harley.mount
2.6 years ago by
harley.mount • 10
harley.mount • 10 wrote:

Hello,

I am just wondering whether it would be possible to implement the C. albicans reference genomes (ideally both strains but preferably the SC5314 version) onto the list of reference strains?

Both can be readily accessed at candidagenome.org

Thanks,

Harley

galaxy • 657 views
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modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by harley.mount • 10
0
gravatar for Jennifer Hillman Jackson
2.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

For these, use a Custom Reference Genome (and Build, as needed). Below is how. The first is a summary, the second more detailed.

Be sure to quickly review formatting on the second link in the section Troubleshooting to avoid problems. Specifically, use chromosome names that are unique, simple alphanumeric with optional underscores, and do not contain description content. Meaning, only this: ">identifier" - (without quotes) - nothing after, no whitespace (spaces, tabs), no additional text content.

https://wiki.galaxyproject.org/Support#Custom_reference_genome

https://wiki.galaxyproject.org/Learn/CustomGenomes

Best, Jen, Galaxy team
ADD COMMENT • link written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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