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Question: Need help with "Map with Bowtie for Illumina" tool
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gravatar for rarango
4.0 years ago by
rarango • 10
rarango • 10 wrote:

Hi, I would like to map RNA-seq reads to the genome of banana. Is it possible to include it in the list of genomes?

It is available at : http://banana-genome.cirad.fr/content/download-dh-pahang

 

 

 

Tool name: Map with Bowtie for Illumina
Tool version: 1.1.2
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/bowtie_wrappers/bowtie_wrapper/1.1.2
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/bowtie_wrappers

 
map-with-bowtie-for-illumina • 1.1k views
ADD COMMENT • link •
modified 4.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.0 years ago by rarango • 10
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gravatar for Jennifer Hillman Jackson
4.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Any genome/exome/transcriptome fasta file can be used as a reference database using the 'Custom Reference Genome' option with tools. Instructions for how to do this are here:

http://wiki.galaxyproject.org/Support#Custom_reference_genome

That said, we are considering including more plant genomes natively on the public Main Galaxy at http://usegalaxy.org in the future. Banana has already been requested and is part of the list.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 4.0 years ago by Jennifer Hillman Jackson ♦ 25k
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