I was having difficulty with the FASTQ splitter, it was not finding my fastq file (an SRA-based FASTQ file from GEO) to be split. After changing the type from FASTQ to FASTQSanger it seemed to work fine (illumina didn't work, I didn't try others). Is this an expected behavior? Does the tool only function for Sanger formatted FASTQ?
Tool name: FASTQ splitter
Tool version: 1.0.0
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_splitter/fastq_paired_end_splitter/1.0.0
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/fastq_paired_end_splitter