Question: Need help with "Map with Bowtie for Illumina" tool
gravatar for rarango
4.0 years ago by
rarango10 wrote:

Hi, I would like to map RNA-seq reads to the genome of banana. Is it possible to include it in the list of genomes?

It is available at :




Tool name: Map with Bowtie for Illumina
Tool version: 1.1.2
Tool ID:
ToolShed URL:


ADD COMMENTlink modified 4.0 years ago by Jennifer Hillman Jackson25k • written 4.0 years ago by rarango10
gravatar for Jennifer Hillman Jackson
4.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Any genome/exome/transcriptome fasta file can be used as a reference database using the 'Custom Reference Genome' option with tools. Instructions for how to do this are here:

That said, we are considering including more plant genomes natively on the public Main Galaxy at in the future. Banana has already been requested and is part of the list.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 4.0 years ago by Jennifer Hillman Jackson25k
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