I am trying to assemble a bacterial genome of length 8Mb in orione.crs4.it . I could successfully load the paired-end illumina dataset into the server, but I am unable to do the de-novo assembly for the paired end data using any of the programs.
Could anyone suggest if the tools are working in the galaxy server? or I am doing something wrong? Please share if there is any protocol for de-novo assembly of a bacterial genome?