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• De Novo Assembly
  Hello, I would like to know if Galaxy can do de novo assembly without a reference genome. Thanks....
• How to make De novo genome assembly?
  Hi, I have an account "on Main".I can't find Velvet for De  Novo genome assembly. However i have...
• De novo assembly of a genome sequence
  I am new to the Galaxy. Can you do a de novo sequence asembly using the Galaxy? Thanks.
• galaxy tutorial data
  I am unable to find data for doing Microbial de novo Assembly for Illumina Data on galaxy. Can an...
• Velvet in usegalaxy.org
  How can i use velvet assembler in usegalaxy.org for de novo whole genome assembly. ?
• De-novo assembly of a bacterial genome
  I am trying to assemble a bacterial genome of length 8Mb in **orione.crs4.it** . I could successf...
• de novo assembly
  Hi folks I would like to use de novo assembly and quantification for mink RNA-Seq data. I am won...
• Quality Assessment of RNA de novo assemble (trinity) without reference genome
  Hello, Are there any tools within the galaxy tool shed that would give me a quality assessment o...
• De novo transcriptome analysis pipeline
  Hello, I am currently running Trinity to do de novo transcriptome assembly of a breeding gland ...
• Which file must be used for assembly?
  I want to assemble a genome using de novo assembly and I am very new to it. The Illumina sequenci...
• salmon output files in Galaxy
  Hi all, I used Salmon tool in Galaxy to both align to my de novo transcriptome assembly and to qu...
• De Novo Assembly Plant Transcriptome
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• de novo assembly in Galaxy using multiple transcriptomes
  I want to do de novo assembly of about 13 fferent transcriptome libraries however in Trinity I fo...
• where is the de novo assembler?
  hi, first of all thanks for your hard work! I'm trying to do a de novo assembly of a mouse transc...
• De novo assembly -Trinity
  Hi All As my project makes a progress I would now like to use Trinity for de novo assembly. I ha...
• Suggestions For De Novo Assembly Plant Transcriptome Without Reference
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• Metatranscriptomic reads alignment and assembly
  Hello. I have a set of metatranscriptomic Illumina paired-end reads. I need to align them agains...
• Flanking regions from SNP list
  Hello  Using the RNA seq data and have performed de novo assembly with non-model species. I have...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• Failiure in running Trinity
  Dear admin, I am trying to de novo assemble my paired-end data (2*100, 460 million reads), but th...