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Question: Error in SNPSift Annotate
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gravatar for debanjan.roy12
4 weeks ago by
debanjan.roy12 • 0
debanjan.roy12 • 0 wrote:

Hello, I am trying to annotate variants from Freebayes Output using SNPSift annotate tool in the public instance of Galaxy but everytime I am getting this error everytime: "This job was terminated because it used more memory than it was allocated".

      I must tell that even after uploading the dbSNP file I had only used up 48 percen of space that has been allocated to my account.

       Can anyone please tell me why am I getting such an error? Any advice on this will be very helpful.

Thanks in advance.
snp galaxy • 55 views
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modified 23 days ago by Jennifer Hillman Jackson ♦ 25k • written 4 weeks ago by debanjan.roy12 • 0
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gravatar for Jennifer Hillman Jackson
23 days ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The memory used to execute jobs is distinct from the memory allocated to account quotas.

This type of error means one of two things:

  • There is a problem with the format or content of one or more of the inputs. Check for a genome mismatch if importing external reference annotation.
  • The data really is too large to process at the public server. (Galaxy Main https://usegalaxy.org?)

FAQ that covers both and options. Includes: 1) reporting the bug for troubleshooting help (but please check the content first on your own, the resolution will go quicker if it is a common issue covered by a linked FAQ) and 2) alternative ways to use Galaxy so you can allocate more resources. https://galaxyproject.org/support/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 23 days ago by Jennifer Hillman Jackson ♦ 25k
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