Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: RNA-star memory error on galaxy
0
gravatar for kshama.goyal
12 days ago by
kshama.goyal • 0
kshama.goyal • 0 wrote:

I am trying to run RNA-star on galaxy for my zebrafish SE and PE samples. However, it is getting terminated with the error "requires more memory than allocated". What should I do?
memory star rna-seq hisat2 • 32 views
ADD COMMENT • link •
modified 1 day ago by Jennifer Hillman Jackson ♦ 25k • written 12 days ago by kshama.goyal • 0
0
gravatar for Jennifer Hillman Jackson
1 day ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

RNA-star is a compute-intensive tool. If your data are very large, the job may really be too large to run at a public server like Galaxy Main https://usegalaxy.org. You might try mapping the data with an alternative tool, such as HISAT2 to see if that works. Jobs that are actually too large to run at public servers can be run on your own Galaxy that has been given sufficient resources. The FAQ below covers the options.

However, this type of memory error can also be triggered by problematic input content or formatting, so be sure to check for those types of problems first. Common causes and solution for data/input issues are also covered in the FAQ below.

Galaxy FAQs: https://galaxyproject.org/support/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 1 day ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour