Hello. I am new to galaxy and trying to learn. I am trying to recreate the heatmap here:
by uploading a compressed tabular formatted text file to galaxy. When attempting to create a clustered heatmap under the "charts" option, I run into an error reading "This job was terminated because it used more memory than it was allocated."
When I try to use the heatmap tool under the regional variation set of tools I get an error reading:
"bash: /galaxy/main/shed_tools/toolshed.g2.bx.psu.edu/repos/guru-ananda/heatmap/89902ebc58b9/heatmap/heatmap//galaxy/main/shed_tools/toolshed.g2.bx.psu.edu/repos/guru-ananda/heatmap/89902ebc58b9/heatmap/r_wrapper.sh: No such file or directory"
Any suggestions for how I can get around these two errors so that I can re create the heatmap would be greatly appriciated. Thanks.
Hello, I see what I believe is your bug report or at least one that is related. Investigating the second error. Feedback soon.
The first error has to do with the size of the data and available resource for such jobs at http://usegalaxy.org. Section 2.8 of the Galaxy support wiki explains alternatives for working with data/jobs that exceed the compute resources at http://usegalaxy.org: https://wiki.galaxyproject.org/Support
Jen, Galaxy team