Hi all. I'm having som trouble running both MACS2 bgddiff and Diffbind. It keeps returning the error: "This job was terminated because it used more memory than it was allocated."
I have 2 ChIP samples with 2 replicates of each. for each IP i also have an input sample. I have used MACS2 callpeak to find enriched regions in both samples and would now like to find differentially enriched regions between the samples, but i am stuck with this memory error. I have tried adjusting the different parameters of both bgddiff and Diffbind (which are quite limited) to try and get a succesfull run, but it keeps returning the same error.
Maby it is simple impossible to run it on the public servers due to the memory issues, but it's a pretty standard analysis and i find it odd to have the tools listed on the public servers if they can't be used for anything.
Do anyone have any ideas as to how i can get this analysis to run on the public servers? any suggestions would be much appreciated.