Similar posts • Search »

• Gene name annotation
  Hi, I've done cufflink-> cuff merge-> cuffdiff finally, I used reference annotation huma...
• Gene And Transcript Names From Cuffdiff
  Hi all, I am learning how to use Galaxy to analyze my RNA-Seq data. After running cuffdiff, one ...
• gene id missing
  Hi , I run the tophat, cufflinks, cuffmerge and cuffdiff on a human data set. I used h19 as refe...
• Galaxy Tuxedo Protocol Questions
  Hi everybody, I'm totally new to RNA-seq analyses and it's my first time doing this and using Ga...
• Annotation file formats .gff3 to .gtf conversion
  Dear all, I used the Galaxy tool to convert the .gff3 annotation file to .gtf format. Going thro...
• Get Gene Name From Cuffdiff'S Output?
  Hi guys, I am trying to examine gene differential expression in my mouse samples using : Cufflink...
• No output from Cuffdiff
  Hi, I've been running Cuffdiff on Galaxy today, exactly as I did last week (using the same refer...
• Gene Names From Cuffdiff Data
  How does one get gene names when using cuffdiff when looking at "gene differential expression tes...
• Annotation file that contains XLOC_ Cuffdiff Gene_ID and Gene Symbol etc.
  I am looking for a stand alone annotation file for mm10 genome that contains all Cuffdiff XLOC_ G...
• Mutliple UCSC gene names in RStudio Data Table
  Hi there, I am using the cummeRbund package in R Studio on my personal computer to analyze diffe...
• Cufflinks and gene name
  Hellos everyone, I know there's many posts regarding this question but I still have found myself...
• Rna-Seq Analysis
  Since the pictures are too big for the mailling list. I will upload it in seperate emails. Dear ...
• Rna-Seq Analysis
  Dear all, I am using Galaxy for RNA-Seq analysis. I expect two lists: differentially expressed tr...
• Cufflinks Assigning separate Cuff I.D. to gene that falls within location of known gene
  Hi, I am following the workflow for differential expression analysis using cuffdiff on galaxy as...
• Cuffdiff gene name
  Hi! I am analyzing RNA-seq using tophat-cufflinks-cuffdiff, but at the end, in the cuffdiff tabl...
• Cuffdiff output redundant genes
  Hello, I am using the Galaxy tool Cuffdiff to analyze the RNA-seq data. But for the output file "...
• gene names and gene ids
  hi i have a annotate file of vcf using vcf annotate and in my out i dont have any gene ids thier...
• using SAF gene annotation file in featurecounts
  Hello! I'm new to Galaxy and was wondering if I could get some help with using the featurecounts...
• Cuffdiff Without Gene Annotation
  Hello guys, I went through the RNAseq workflow (I didn't do Cuffmerge) and from the Cuffdiff outp...
• How to covnvert gene id to gene names
  Hi, I have been using Tophat, cufflink, cuffmerge and cuffdiff to analyse RNA seq data. I hav...
• Problem With Cuffdiff
  Hy guys, I am performing some RNA sequencing. I am using a gtf file as a reference annotation for...