Fastq files not recognized

Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Forum

Planet

All »

Home

Welcome to Galaxy Biostar! User support for Galaxy! about • faq • rss

Community

Log In

Sign Up

Add New Post

Question: Fastq files not recognized

12 months ago by

tkirkland • 0

tkirkland • 0 wrote:

I have uploaded data sets that are labelled fastqsanger.gz. But when I try to use those data sets I get the message "No fastqsanger.gz data set available". Can you tell me what I am doing wrong?

Thanks

Theo

fastq fastqsanger.gz tools input fastqsanger • 321 views

ADD COMMENT • link •

modified 11 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by tkirkland • 0

11 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I cannot reproduce this at Galaxy Main https://usegalaxy.org.

Double check that:

The datasets are actually assigned the datatype (not just uploaded with that file extension)
The tool accepts fastqsanger or fastqsanger.gz input

I tested with a few tools that expect fastqsanger formatted input at Galaxy Main. For your case:

What tool is presenting the problem?
Where are you using Galaxy?
Is this related to your other question of being over quota (https://biostar.usegalaxy.org/p/25924/)?

https://galaxyproject.org/support/#troubleshooting

Thanks! Jen, Galaxy team

ADD COMMENT • link written 11 months ago by Jennifer Hillman Jackson ♦ 25k

Please log in to add an answer.

Similar posts • Search »