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• Trinity - De novo transcriptome assembly
  Jobs submitted to Trinity for de novo assembly at Galaxy main hang in "This job is waiting to run...
• Trinity + Unicycler assembly failures at https://usegalaxy.org
  Hi administrators, I tried to perform trinity assembly but an error has occurred "Remote job ser...
• Trinity is not working
  Trinity tool is not working. Is something wrong with the algorithm? When will it be available? Is...
• Transcriptome assembly with Trinity-Jaccard_Clip
  Dear all May I implement a transcriptome assembly using the parameter --jaccard_clip in the wr...
• Trinity
  I want to run Trinity on the "test" instance of Galaxy, but there seems to be a problem. The anal...
• Trinity Error, job did not complete
  Hello, I asked a question last week regarding my Trinity assembly. It would not start the run (a...
• Trinity assembly occuring but result coming empty..
  Hello there, I am facing a serious issue now...for many days I am trying to denovo assemble my tr...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• Long queue time for Trinity?
  I’ve had all my Trinity assembly jobs queued for several days, any idea when these might start ru...
• read representation using trinity
  Is there any way to analyse the trinity assembly for RNA seq read representation and Transcriptom...
• problem in transcriptome assembly
  I successfully assembled my raw reads to generate assembly. But when I concatenate the reads, the...
• Probem with the Trinity de-novo assembly for big dataset (128GB)
  I had 48 paired end samples, I concatinae all the 24 forward and reverse paired separately and tr...
• Trinity, Unicycler Job Error "Remote job server indicated a problem running or monitoring this job."
  When attempting Trinity assemblies with Trimmomatic paired end files, the run fails and I receive...
• what is a "Tabular file with Transcript - Gene mapping" in DESeq2?
  I have RNA Seq data from two conditions using a non-model organism. I constructed a trinity assem...
• where is the de novo assembler?
  hi, first of all thanks for your hard work! I'm trying to do a de novo assembly of a mouse transc...
• trinity statistical analysis
  Hi I am new trinity user at usegalaxy. I used trinity to assemble my NGS data and received fasta ...
• Trinity error with fasta input - solution: use fastq input instead
  I'm trying to use Trinity to do a de novo assembly from short reads. However the output file "As...
• Missing columns in referenced dataset
  Dear All, I hope you are extremely well. I have used trinity for denovo assembly of my reads ...
• Trinity job not running
  Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired...
• generating 0 bytes for trinity assembled transcript file
  I used a single end fastqsanger file ( related to the leaf of Solanum ) and tried to run trinity ...
• How long does galaxy-trinity program take to denovo assembly
  Hello Admin, How long does galaxy-trinity program take to denovo assembly of a 2*100 bp paired-e...
• salmon output files in Galaxy
  Hi all, I used Salmon tool in Galaxy to both align to my de novo transcriptome assembly and to qu...
• definition of "evidence code weights"
  Hi Could you please let me know about definition of "evidence code weights" in Blast2GO?
• set_environment fails to set up Trinity path
  I have a local galaxy instance on which I am trying to run Trinity. I have the following in my ba...