Similar posts • Search »

• Job waiting to run (Trinity)
  Hi, I’m a new user of Galaxy. I’m just trying to run a De novo Assembly with Trinity. It’s been ...
• Human genome RNA Seq fastq file
  How long does it take to upload and visualize a human genome FASTq file in Galaxy? Thank you.
• Long queue time for Trinity?
  I’ve had all my Trinity assembly jobs queued for several days, any idea when these might start ru...
• How long does mapping with bowtie in ChIP-Seq take?
  My request has been running for a long time now, when will it be finished? -amh22
• long running time on freebayes with a bam file
  Hi, I am using Galaxy freebayes to call variants on a WES bam file. It apparently takes very long...
• trinity statistical analysis
  Hi I am new trinity user at usegalaxy. I used trinity to assemble my NGS data and received fasta ...
• Transcriptome assembly with Trinity-Jaccard_Clip
  Dear all May I implement a transcriptome assembly using the parameter --jaccard_clip in the wr...
• Trinity jobs on hold for four days
  Hi everybody, Is there anything wrong with the Trinity De Novo RNA-Seq assembly? I submitted my j...
• Trinity assembly multiple files
  Dear Galaxy team, I am trying to assemble 12 paired reads at the same time using Trinity on Gala...
• time to run cufflinks
  How long does it take to run cufflinks? It has been submitted for 48 hours and still has the gra...
• Uncomplete Unicycler Assembly process for more than 24h
  How long will it take to complete the unicycler assembly? I had waited for more than 24 hours. Th...
• De novo assembly -Trinity
  Hi All As my project makes a progress I would now like to use Trinity for de novo assembly. I ha...
• Trinity with multiple datasets
  Hello, I am running trinity on 4 data sets (2 left reads, 2 right reads) and I want it to be com...
• generating 0 bytes for trinity assembled transcript file
  I used a single end fastqsanger file ( related to the leaf of Solanum ) and tried to run trinity ...
• Fwd: Workflows With Conditional Statements
  I filed an enhancement report since if the workflow conditional facility does not appear to exist...
• read representation using trinity
  Is there any way to analyse the trinity assembly for RNA seq read representation and Transcriptom...
• Bowtie And Bwa Queue'D Up For Hours
  Does anyone know why these mapping programs are taking so long to start running? Is there a prob...
• problem in transcriptome assembly
  I successfully assembled my raw reads to generate assembly. But when I concatenate the reads, the...
• RNA Analysis cufflinks
  How long does cufflinks usually take to run on RNA analysis? I had it running for about an hour a...
• Trinity Error Message
  Hi, I recently ran trinity and my job failed (red) with this error message:Fatal error: Exit code...
• Where can I find the Trinity statistics?
  Hi, This is maybe a stupid question, but I am new to RNA sequencing and the Galaxy environment -...