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• read representation using trinity
  Is there any way to analyse the trinity assembly for RNA seq read representation and Transcriptom...
• problem in transcriptome assembly
  I successfully assembled my raw reads to generate assembly. But when I concatenate the reads, the...
• de novo assembly in Galaxy using multiple transcriptomes
  I want to do de novo assembly of about 13 fferent transcriptome libraries however in Trinity I fo...
• De novo transcriptome analysis pipeline
  Hello, I am currently running Trinity to do de novo transcriptome assembly of a breeding gland ...
• Trinity - De novo transcriptome assembly
  Jobs submitted to Trinity for de novo assembly at Galaxy main hang in "This job is waiting to run...
• Can I execute multiple Trinity assemblies at once?
  Hi all, I would like to conduct many (~100) transcriptome assemblies using Trinity. I have bee...
• De Novo Assembly Plant Transcriptome
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• Trinity with multiple datasets
  Hello, I am running trinity on 4 data sets (2 left reads, 2 right reads) and I want it to be com...
• Trinity assembly occuring but result coming empty..
  Hello there, I am facing a serious issue now...for many days I am trying to denovo assemble my tr...
• Normalization on Single End and Paired End reads
  Hi there. I want to assemble a transcriptome with Trinity using reads that are both paired- and ...
• Suggestions For De Novo Assembly Plant Transcriptome Without Reference
  Dear Galaxy Expert, I would like to use Galaxy to de-novo assembly single-end read illumina data...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• Trinity is not working
  Trinity tool is not working. Is something wrong with the algorithm? When will it be available? Is...
• definition of "KmerAlignCore" in Trinity assembly
  Hi Could you please let me know about definition of "KmerAlignCore" in Trinity assembly?
• where is the de novo assembler?
  hi, first of all thanks for your hard work! I'm trying to do a de novo assembly of a mouse transc...
• Long queue time for Trinity?
  I’ve had all my Trinity assembly jobs queued for several days, any idea when these might start ru...
• Extract assembled transcripts from Cufflinks gtf without to use reference genome
  Hi all, I know there were similar questions, but unfortunately I couldn't find proper answer for...
• Transcriptome Hypericum Perforatum
  To whom it may concern I would like to kindly ask you if you do have any experience in de- novo...
• Trinity results mismatch during alignment
  Hello Jen I thank you for your help. I think I have understood why there is a mismatch. I run de...
• salmon output files in Galaxy
  Hi all, I used Salmon tool in Galaxy to both align to my de novo transcriptome assembly and to qu...
• trinity statistical analysis
  Hi I am new trinity user at usegalaxy. I used trinity to assemble my NGS data and received fasta ...