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Question: Trinity
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gravatar for David Joly
7.2 years ago by
David Joly • 100
David Joly • 100 wrote:
I want to run Trinity on the "test" instance of Galaxy, but there seems to be a problem. The analysis complete very quickly and I've got no assembled transcripts. In the log file created by Trinity, there is one line: /var/spool/torque/mom_priv/jobs/1204985.thumper.g2.bx.psu.edu.SC: 11: Trinity.pl: not found Any idea? David
galaxy • 1.3k views
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modified 7.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.2 years ago by David Joly • 100
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gravatar for Jennifer Hillman Jackson
7.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi David, Trinity is still under development and really shouldn't be on the Test instance yet (in fact, we are removing it). Very sorry about any confusion. It is a known that assembly tools would be very useful for many of our users (starting from a few sources: SAMTools Pileup, de novo RNA-seq) and are working towards tools/solutions in the near term. To be alerted when new tools are available, you can follow our News RSS feed http://galaxyproject.org/wiki/News. New tools are always announced in the News Brief, in an email to mailing list subscribers, and sometimes Tweeted. Thanks for using Galaxy! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENT • link written 7.2 years ago by Jennifer Hillman Jackson ♦ 25k
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