Question: Which Reference Genome Should I Select
gravatar for Du, Jianguang
6.3 years ago by
Du, Jianguang380
Du, Jianguang380 wrote:
Dear All, I am going to run Tophat with mouse RNA-seq datasets. When I uploaded the datasets with URL method, I chose "Mouse July 2007 (NCBI37/mm9) (mm9)" under Genome. So " database: mm9" appears in the brief description of each dataset in history. My question is: when I run Tophat, under "Will you select a reference genome from your history or use a built-in index?", should I selct "Use a built-in index" or "Use one from the history" ? Thanks. Jianguang Du
rna-seq tophat • 1.2k views
ADD COMMENTlink modified 6.3 years ago by Jennifer Hillman Jackson25k • written 6.3 years ago by Du, Jianguang380
gravatar for Jennifer Hillman Jackson
6.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello, The option is "Use a built-in index" to use the mm9 reference genome database already in Galaxy (most likely what you want to do). Thanks, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.3 years ago by Jennifer Hillman Jackson25k
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