Question: Fetch Taxonomic Representation and Kraken
gravatar for Elaine Youngman
2.6 years ago by
Elaine Youngman10 wrote:


I need to do a quick analysis of taxonomy for a small set of Illumina reads (~1200), and was planning to use "Fetch Taxonomic Representation." However, I see in previous threads that this tool has been hidden, with the intention of replacing it with Kraken. Kraken is not useable yet, as there are no databases loaded - correct? Is there an alternate solution that is immediately available? Perhaps a group-specific Galaxy site somewhere? We are working on installing Galaxy to a local machine, but get an error when running Fetch Taxonomic Representation: Traceback (most recent call last): File"/home/biolab/shed_tools/", line 166, in <module> get_taxId( GI2TAX, collapse_repeating_gis( g2n ), ) File "

I was hoping to run a small dataset on the public server as a test.


metagenomics • 709 views
ADD COMMENTlink written 2.6 years ago by Elaine Youngman10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 165 users visited in the last hour