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• Galaxy for alignment for genomes of bacterial species
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• Add a reference genome
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• Bacterial Sequence for Variant Analysis
  I am analyzing paired-end data for bacterial genome and have done the following steps: *FAST...
• Could you add reference genomes into the database?
  I got bacterial whole genome sequencing data from illumina and want to align them with reference ...
• Genome of Campylobacter jejuni 81-176
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• Loading VCF into a local IGV fails with metadata error during data prep step
  Although my genome sequence is part of the list of options thanks to custom build, the link to di...
• Alignment of entire bacterial genomes
  How entire genomic alignment of bacterial species can be carried out????? I have added ten genom...
• RNAseq analysis for Bacterial genomes
  Hello, I am interested in using the tuxedo suit to analyze RNAseq data from the bacteria Strepto...
• Bacterial Metatranscriptomes
  Hi everybody, I am trying to perform metatranscriptomic analysis on gut samples. Whereas the host...
• Set unified genotyper for bacterial genomes
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• Need to GFF file for RNA-seq analysis
  Hello, I am doing RNA-seq analysis using use galaxy.org, I want to run htseq but I do not know...
• How to add a bacterial genome to Galaxy database?
  I have my ChIP-Seq data on Galaxy but can't map it because the bacterial genome that I am working...
• what is thye meaning of too low aQual in Htseq
  I am doing the bacterial NGS data analysis and i ran the Htseq after Bowtie on my data. Can some ...
• Use whole genome or cDNA sequences for RNAseq alignment
  Hello,    I'm working on my first RNAseq analysis, and I'm unsure of how to proceed with my TopH...
• Analysis Of 454 Data
  Dear All, I'm very very much new to this ngs platform... and I'm currently getting started to w...
• De-novo assembly of a bacterial genome
  I am trying to assemble a bacterial genome of length 8Mb in **orione.crs4.it** . I could successf...
• MSA and phylogenetic tree for WGS data of mammalian species
  Hiii.... i want to do multiple sequence alignment to get format compatible for constructing a phy...
• Re: Cufflinks Merging More Than One Transcript On Bacterial Genomes
  Noa, I'm not sure that folks on this list have much experience with bacterial transcriptome ana...
• Bacterial genome annotation using annovar
  Hello, am writing my own pipeline in python in order to annotate bacterial genome MTB, am new in ...
• Unicycler bacterial genome assembly result visualization
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• Metatranscriptomic reads alignment and assembly
  Hello. I have a set of metatranscriptomic Illumina paired-end reads. I need to align them agains...
• Pipeline Design For Bacterial Rna-Seq
  Hi community, I have just discovered a wonderful Galaxy server for RNA-Seq analysis: Oqtans http...