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• Alignment of entire bacterial genomes
  How entire genomic alignment of bacterial species can be carried out????? I have added ten genom...
• Bacterial Metatranscriptomes
  Hi everybody, I am trying to perform metatranscriptomic analysis on gut samples. Whereas the host...
• Stitch MAF blocks
  This is about the module "Stitch MAF blocks" which can be found in "Fetch Alignments" in Galaxy. ...
• How to add a bacterial genome to Galaxy database?
  I have my ChIP-Seq data on Galaxy but can't map it because the bacterial genome that I am working...
• Getting Sequences For Multiple Species From Ucsc
  Hi all, I am wondering if there is a way to download sequence information from UCSC into Galaxy ...
• Extract MAF for whole genome and some species
  Hello, I am trying to obtain the whole genomes for some species with Galaxy. I have found the ve...
• bacterial whole genome analysis
  good day, how do i upload my fastq files to galaxy server to perform bacterial whole genome anal...
• Metatranscriptomic reads alignment and assembly
  Hello. I have a set of metatranscriptomic Illumina paired-end reads. I need to align them agains...
• Masking reads that map to two genomes in galaxy
  I've gotten RNAseq data (paired end Illumina) that is from two different species. I've used Topha...
• Create and extract consensus sequence after initial genome mapping using a custom genome
  I have aligned fastq sequences (from an insect vector) to a small bacterial genome of 1.2 mb (as...
• accessing MAF alignment data on Galaxy
  Hi, I'm trying to perform analysis on MAF data on the public instance of Galaxy, but I'm unable ...
• Fetch Codons And Amino Acid
  Hi all, I am a new Galaxy user and I have searched the mail list, looking for the answers to my ...
• Convert genome coordinates between assemblies and genomes (Galaxy Version 1.0.5) aka LiftOver
  I have two related bacterial genomes of same species - different subspecies. I want to map the co...
• How To Add Alignment To The Maf
  Hi galaxy, I'm trying to know the coding potential of my RNA-seq transcripts by phylogeny analys...
• Can Galaxy Help With Comparative Genomics?
  The lab I work with would like to compare a few populations' genomes of a species with an unpubli...
• Bacterial RNAseq in Galaxy
  Is there a workflow to follow alignment of bacterial RNAseq. I want to align FAStq file and then ...
• De novo transcriptome assembly and reference guided transcriptome assembly
  Hi, I have four related questions about de novo RNAseq data analysis. I have 4 RNAseq data obtai...
• Set unified genotyper for bacterial genomes
  Hello, could someone tell me how to set the ploidy of unified genotyper to 1, to run it for bact...
• Taxonomical similar bacterial genomes donot clutser together in dendrogram
  The 7 metagenomic assemblies of different species of Azolla fern was the raw data i had. The aim ...
• Please put Xenopus laevis genome on Galaxy
  Hello, Many labs using tools on Galaxy would like to see the Xenopus laevis genome as built-in g...
• MSA and phylogenetic tree for WGS data of mammalian species
  Hiii.... i want to do multiple sequence alignment to get format compatible for constructing a phy...