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Question: Could you add reference genomes into the database?
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gravatar for ghliu83
4.5 years ago by
ghliu83 • 0
United States
ghliu83 • 0 wrote:

I got bacterial whole genome sequencing data from illumina and want to align them with reference genome. Could you add following genomes into your database?

Streptococcus pyogenes MGAS5005 NC_007297.1

Streptococcus pyogenes MGAS315 NC_004070.1

Streptococcus pyogenes MGAS9429 NC_008021.1

Streptococcus pyogenes MGAS6180 NC_007296.1

Thank you.
assembly genome • 974 views
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modified 4.5 years ago by Dannon Baker ♦ 3.7k • written 4.5 years ago by ghliu83 • 0
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gravatar for Dannon Baker
4.5 years ago by
Dannon Baker ♦ 3.7k
United States
Dannon Baker ♦ 3.7k wrote:

I've added these to the Genome Request card on our trello board:

https://trello.com/c/mJWnAuuQ

Thanks!

-Dannon
ADD COMMENT • link written 4.5 years ago by Dannon Baker ♦ 3.7k
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gravatar for Jennifer Hillman Jackson
4.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi,

You can also use the genomes right now as a Custom Reference Genome, with most tools including mapping and visualization with Trackster. This is true at http://usegalaxy.org and other public Galaxy servers that have the option active. Instructions are here: http://wiki.galaxyproject.org/Support#Custom_reference_genome

Best, Jen, Galaxy team
ADD COMMENT • link written 4.5 years ago by Jennifer Hillman Jackson ♦ 25k
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