Question: Pipeline Design For Bacterial Rna-Seq
gravatar for Bernardo Bello
5.9 years ago by
Bernardo Bello40 wrote:
Hi community, I have just discovered a wonderful Galaxy server for RNA-Seq analysis: Oqtans I am impressed by the huge quantity of useful tools that they have integrated there. I'm dealing with bacterial transcriptome analysis. We have the genome sequence of this bacteria. RNA samples are now been sequenced and I am designing a pipeline for data analysis. I would like you to suggest me the tools that I can/should use in order to analyse my data. My sequences come from Ion Torrent platform. For each sample I have a fastQ file of about 3 million sequences. They are less than 200 bp and have a mean of 150 bp. I you need more information please ask me. Thank you very much for your help. Regards, Bernardo -- *Bernardo Bello Ortí* PhD student CReSA-IRTA Campus de Bellaterra-Universitat Autňnoma de Barcelona Edifici CReSA 08193 Bellaterra (Barcelona, Spain) Tel.: 647 42 52 63 * * * *
galaxy • 1.8k views
ADD COMMENTlink modified 5.9 years ago by Jennifer Hillman Jackson25k • written 5.9 years ago by Bernardo Bello40
gravatar for Jennifer Hillman Jackson
5.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Bernardo, The MLB Galaxy Support Team that runs this Galaxy site asks that they be contacted at: (Noted on main home page and listed under "Help -> Email). They would be the best experts to help you understand and use the tools they have developed. More link/information to their project is in our wiki ( -> Oqtans), but starting with this specific project's support email as a first step would be a good choice to get oriented. Good luck with your project! Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 5.9 years ago by Jennifer Hillman Jackson25k
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