Question: Pipeline Design For Bacterial Rna-Seq
0
Bernardo Bello • 40 wrote:
Hi community,
I have just discovered a wonderful Galaxy server for RNA-Seq analysis:
Oqtans http://galaxy.raetschlab.org/. I am impressed by the huge
quantity
of useful tools that they have integrated there.
I'm dealing with bacterial transcriptome analysis. We have the genome
sequence of this bacteria.
RNA samples are now been sequenced and I am designing a pipeline for
data
analysis. I would like you to suggest me the tools that I can/should
use in
order to analyse my data. My sequences come from Ion Torrent platform.
For
each sample I have a fastQ file of about 3 million sequences. They are
less
than 200 bp and have a mean of 150 bp. I you need more information
please
ask me.
Thank you very much for your help.
Regards, Bernardo
--
*Bernardo Bello Ortí*
PhD student
CReSA-IRTA
Campus de Bellaterra-Universitat Autňnoma de Barcelona
Edifici CReSA
08193 Bellaterra (Barcelona, Spain)
Tel.: 647 42 52 63 *www.cresa.es *
*
*
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modified 5.9 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
5.9 years ago by
Bernardo Bello • 40
