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• Galaxy for alignment for genomes of bacterial species
  Galaxy can be used for alignment for genomes of bacterial species or not?? How genome sequence ca...
• Clustal alignments for ref_seq genes across specific mammals
  Hello I'm trying to do a gene-by-gene phylogenetic analysis between several mammalian species. T...
• Repeted tandem in whole genome using Galaxy
  Hi everyone, it's my first post here. I have no extensive knowledge on bioinformatics but, i wan...
• bacterial whole genome analysis
  good day, how do i upload my fastq files to galaxy server to perform bacterial whole genome anal...
• Taxonomical similar bacterial genomes donot clutser together in dendrogram
  The 7 metagenomic assemblies of different species of Azolla fern was the raw data i had. The aim ...
• wig to bigwig format in galaxy, unavailable genome
  Hi, I would like to convert a .wig file to a .bigwig file. Should be straightforward, but I am...
• NCBI genome to Galaxy
  I am trying to download Brachypodium distachyon strain Bd21 chromosome 2, Brachypodium_distachyo...
• Extract MAF for whole genome and some species
  Hello, I am trying to obtain the whole genomes for some species with Galaxy. I have found the ve...
• Making dg SNP file-parameters setting complication for whole genome data
  I am stuck with setting parameters while making a dg SNP file for my whole genome data in tabular...
• De novo transcriptome assembly and reference guided transcriptome assembly
  Hi, I have four related questions about de novo RNAseq data analysis. I have 4 RNAseq data obtai...
• Cuffdiff Question About Using An Unspecified (?) Database/Build
  Hello! I have an RNA-Seq project which consists of 5 samples from the species tr...
• How To Add Alignment To The Maf
  Hi galaxy, I'm trying to know the coding potential of my RNA-seq transcripts by phylogeny analys...
• Trouble In Extracting Species On Maf Imported From Ucsc
  Hi, When I import a multiz46way maf alignement from UCSC, if is is a whole chromosome, then when...
• Bowtie for Illumina using reference genome of pisifera oil palm tree
  How I can map reads against pisifera oil palm tree genome or against scaffolds? Thank you for a ...
• Filter MAF by chr
  Hi all, I have a big MAF file (7 Gb) corresponding to several alignments and regions in the whole...
• Chip-Chip Data
  Hi- the chip-chip data is in wiggle format and galaxy sends this message error, format: wig, d...
• Alignment of entire bacterial genomes
  How entire genomic alignment of bacterial species can be carried out????? I have added ten genom...
• Getting species/taxa from GIs
  Hi there, I'm using megablast to find out whether my RNAseq data might contain contamination from...
• Problem Report!!
  Dear Galaxy member, I'm sending you this e-mail because of a problem I have in fetching sequence...
• Galaxy interval format - what should be provided as CHROM#?
  Dear colleagues, I have a .txt file with >100 lines of the following format (1st column - seq...