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• Can't auto detect metadata
  Hi, I ran Tophat on my RNAseq data and an error occurred setting the metadata. This has happened ...
• Cufflinks does not work
  Hi, I run Cufflinks on Galaxy public server for 1 week and it did not end. Basically, I faced th...
• View Running Job From Multiple Computers?
  Hi,   I have an instance of Galaxy running on AWS. I would like to view it's progress throughout ...
• Cufflink not running
  Dear galaxy admin and user, Cufflink is not running for two particular datasets. While cufflink ...
• Tophat failed to run on RNAseq data?
  Tophat failed to run on my RNAseq data. Before running tophat, I groomed, trimmed, and filtered m...
• why Tophat very very slow on the galaxy project last 2 days?
  Hi everybody, I was using Tophat last week it was a little bit fast, now I'm trying to run a job ...
• cufflink jobs in queue for 3 days
  Hello, I had set up a cufflink job saturday morning. I thought it may have been an error on my e...
• jobs in queue for too long
  I started to run a workflow with many jobs recently. It ran very smoothly until yesterday but sin...
• FastQC job just keeps running without any output
  I just installed the latest Galaxy version 18.01 of Galaxy on a virtual machine running Ubuntu. F...
• Jobs not running
  Hi, I been waiting for Cufflinks jobs to run for 2 days. Jobs were running on time before Sunday...
• Trying to run a Tophat on a local galaxy server but it gives me an empty bam file and following message: galaxy_27.sh: line 29: bowtie2-build: command not found
  I am trying to run a Tophat on a local galaxy server but it shows a following message. I guess I...
• All history panes perpetually loading
  Hi,  Over the past couple of days, I've been having trouble accessing my current histories in th...
• Server Down?
  I am using Galaxy main and my jobs aren't running. They are still grey colored, indicating that ...
• Trinity, Unicycler Job Error "Remote job server indicated a problem running or monitoring this job."
  When attempting Trinity assemblies with Trimmomatic paired end files, the run fails and I receive...
• Clustal Error During Bowtie Run (Public Server)
  Dear all, I was trying to use Bowtie on the public server to align my groomed paired reads to a ...
• How to get Cufflinks to show gene ID?
  How can I get Cufflinks to show the gene ID for each sample and not the Cufflinks ID? I have used...
• Tool error "Remote job server indicated a problem running or monitoring this job"
  Hello, While running Cufflinks in Galaxy, I keep receiving the error "Remote job server indicat...
• How jobs execute at Galaxy servers
  My file for pileup has more than 24 hours running job and It still said: "the job is currently ru...
• Galaxy Main Jobs Not Running?
  Hello, I was just wondering whether anyone could confirm whether the Galaxy Main server is curre...
• Filter FASTQ by length job "currently running" for 24+ hrs.
  Hello! I am using Galaxy. I have a library of small RNA in FASTQ format that I am trying to filt...
• Long wait times Htseq, featurecounts and Cufflinks
  Hi I have tried running a few jobs (~15) on Cufflinks, feature counts and Ht-seq counts. While a ...
• Is Trinity currently working?
  I'm trying to run Trinity but keep receiving the following error message: "Remote job server indi...