Question: Trying to run a Tophat on a local galaxy server but it gives me an empty bam file and following message: galaxy_27.sh: line 29: bowtie2-build: command not found
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jaeil.han • 10 wrote:
I am trying to run a Tophat on a local galaxy server but it shows a following message.
I guess I need Bowtie2 installed. I already installed bowtie but I cannot find bowtie2 in tool_shed
Log: tool progress Log: tool progress /Users/jaeilhan/Downloads/galaxy-dev/database/job_working_directory/000/27/galaxy_27.sh: line 29: bowtie2-build: command not found /Users/jaeilhan/Downloads/galaxy-dev/database/job_working_directory/000/27/galaxy_27.