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Question: Long wait times Htseq, featurecounts and Cufflinks
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gravatar for TJ
17 months ago by
TJ • 0
TJ • 0 wrote:

Hi I have tried running a few jobs (~15) on Cufflinks, feature counts and Ht-seq counts. While a few of the jobs were done within an hour, the remaining jobs have been waiting to run for more than 2 days.

Is there a way for me to speed up this process?

Best and thanks TJ

EDIT: I use the main Galaxy server @ https://usegalaxy.org
rna-seq galaxy cufflinks • 503 views
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modified 17 months ago by Jennifer Hillman Jackson ♦ 25k • written 17 months ago by TJ • 0
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gravatar for Jennifer Hillman Jackson
17 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is a normal wait time after starting up so many jobs at once.

Logic: A batch of your jobs will go through, then others that haven't run jobs today will get a batch of their's through, then you will get a batch through, repeat. This helps to share resources fairly among all users. Some people queue up many jobs at time, others just one or two. Each get a "batch" through on each rotation. Deleting/restarting jobs in your account will not change this, except to place the new jobs at the back of the queue, extending wait time even more.

If no jobs at all run within your account, across all of your histories, in any 24-36 hour time period, please let us know. That indicates a problem.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 17 months ago by Jennifer Hillman Jackson ♦ 25k
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