Question: How to get Cufflinks to show gene ID?
gravatar for smthorpe
2.7 years ago by
United States
smthorpe10 wrote:

How can I get Cufflinks to show the gene ID for each sample and not the Cufflinks ID? I have used a GTF and GFF file for each Cufflinks sample but I am still getting Cufflinks Ids. Any suggestions or tutorial help would be welcome as this is apart of my thesis!

rna-seq cufflinks • 1.2k views
ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.7 years ago by smthorpe10
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


The reference annotation must contain certain key attributes and be an exact match for the reference genome. More here:

Best, Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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